Metagenomic sequence data analysis pipeline

参考基因组自动化下载方法

all about microbial genome

Bioinformatics training resources

A tool for generating consensus long-read assemblies for bacterial genomes

A complete pipeline for metagenomic analysis

Python Data Science Handbook: full text in Jupyter Notebooks

My collection of Python Programs

利用Python进行数据分析 第二版 (2017) 中文翻译笔记

Software for prediction of plasmid sequences in metagenomic assemblies

NCBI Prokaryotic Genome Annotation Pipeline

pb-metagenomics-tools

Python script for downloading bacterial genomes from NCBI ftp

An R package for data analysis in microbial community ecology

Amplicon sequencing pipelines suitable for SSU (16S, 18S), LSU (23S, 28S) and ITS.

GitHub中文排行榜，各语言分设「软件 | 资料」榜单，精准定位中文好项目。各取所需，高效学习。

Version 5 of the CAFE phylogenetics software

A curated list of nextflow based pipelines

small RNA detection from paired-end RNA-seq data

R scripts for Analysis of Composition of Microbiomes (ANCOM).

Comprehensive alignment, whole-genome coverage, and capture coverage statistics.